Estimating the burden of vaccine-preventable lower respiratory tract disease in UK primary care: protocol for a prospective surveillance study (AvonCAP GP2)

^aFor adults who present to the emergency department, they will only be eligible if they are not admitted to hospital. ^bThe research team will run a search of the electronic GP records at least twice a day to identify adults with aLRTD diagnosis, symptoms, clinical findings, and/or prescribed antibiotics. They will manually review the consultation notes, including free text, and contact the patient to assess eligibility. ^cWe have approval from the Confidentiality Advisory Group to include specific groups of patients in the surveillance arm without consent, including those we are unable to contact (at least three failed contact attempts over ≥24 hours) and patients at the end of life. If a patient lacks capacity to provide consent (for example, owing to cognitive impairment or dementia), the research team will attempt to contact a family member, friend, or unpaid carer of the patient (that is, a personal consultee) to discuss the patient’s willingness to take part. If they are unable to contact a personal consultee or if the person contacted does not want to take on the role of personal consultee, the research practitioner or nurse will attempt to identify and contact a nominated consultee. ‘Medical data’ refers to routinely collected data within the electronic GP records. ^dIf a patient declines consent (or other specified cohorts of patient), descriptive data will be collected, including: screening ID, anonymous encrypted NHS number, date of eligible condition, reasons for declining to participate, eligibility, qualifying condition, severity of illness, gender, age, deprivation decile, ethnicity, whether they reside in a care home or not, whether they require a translator (and if so what language), category of patient presentation (out-of-hours GP, in-hours GP, or emergency department), whether they die within 30 days of their appointment, and, if so, whether their death was related to their qualifying illness. ^eDaily symptom diary until recovery from illness or for up to 28 days. ^fNose and/or throat, saliva, and urine samples collected on day 1. ^gFollow-up survey (on quality of life, time off work, and recovery) at 6 weeks, 8 weeks, 3 months, 4 months, 5 months, 6 months, 9 months, and 12 months (until fully recovered from illness). aLRTD = acute lower respiratory tract disease.